Luis Pedro Coelho

BDB-Lab Publications

  1. SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing
  2. metaMIC: reference-free Misassembly Identification and Correction of de novo metagenomic assemblies
  3. ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics
  4. EXPERT: Transfer Learning-enabled context-aware microbial source tracking
  5. Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
  6. A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
  7. Software testing in microbial bioinformatics: a call to action
  8. Microbiome and metabolome features of the cardiometabolic disease spectrum
  9. Functional and evolutionary significance of unknown genes from uncultivated taxa
  10. Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism
  11. Towards the biogeography of prokaryotic genes
  12. Combinatorial, additive and dose-dependent drug–microbiome associations
  13. An open code pledge for the neuroscience community
  14. GUNC: detection of chimerism and contamination in prokaryotic genomes
  15. Metagenomic assessment of the global diversity and distribution of bacteria and fungi
  16. Macrel: antimicrobial peptide screening in genomes and metagenomes
  17. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
  18. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
  19. Microbial abundance, activity and population genomic profiling with mOTUs2
  20. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
  21. Global Trends in Marine Plankton Diversity across Kingdoms of Life
  22. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
  23. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
  24. Extensive transmission of microbes along the gastrointestinal tract
  25. Similarity of the dog and human gut microbiomes in gene content and response to diet
  26. Structure and function of the global topsoil microbiome

Full list of publications on Google Scholar...

Copyright (c) 2018–2023. Luis Pedro Coelho and other group members. All rights reserved.