Luis Pedro Coelho

Principal Investigator

BDB-Lab Publications

  1. Computational exploration of the global microbiome for antibiotic discovery
  2. Towards Monitoring of Antimicrobial Resistance in the Environment: For what Reasons, How to Implement It, and What Are the Data Needs?
  3. SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing
  4. ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics
  5. metaMIC: reference-free Misassembly Identification and Correction of de novo metagenomic assemblies
  6. EXPERT: Transfer Learning-enabled context-aware microbial source tracking
  7. Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
  8. A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
  9. Software testing in microbial bioinformatics: a call to action
  10. Microbiome and metabolome features of the cardiometabolic disease spectrum
  11. Functional and evolutionary significance of unknown genes from uncultivated taxa
  12. Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism
  13. Towards the biogeography of prokaryotic genes
  14. Combinatorial, additive and dose-dependent drug–microbiome associations
  15. An open code pledge for the neuroscience community
  16. GUNC: detection of chimerism and contamination in prokaryotic genomes
  17. Metagenomic assessment of the global diversity and distribution of bacteria and fungi
  18. Macrel: antimicrobial peptide screening in genomes and metagenomes
  19. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
  20. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
  21. Microbial abundance, activity and population genomic profiling with mOTUs2
  22. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
  23. Global Trends in Marine Plankton Diversity across Kingdoms of Life
  24. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
  25. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
  26. Extensive transmission of microbes along the gastrointestinal tract
  27. Similarity of the dog and human gut microbiomes in gene content and response to diet
  28. Structure and function of the global topsoil microbiome

Full list of publications on Google Scholar...

Copyright (c) 2018–2023. Luis Pedro Coelho and other group members. All rights reserved.