Luis Pedro Coelho

BDB-Lab Publications

  1. metaMIC: reference-free Misassembly Identification and Correction of de novo metagenomic assemblies
  2. ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics
  3. EXPERT: Transfer Learning-enabled context-aware microbial source tracking
  4. Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
  5. A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
  6. Software testing in microbial bioinformatics: a call to action
  7. Microbiome and metabolome features of the cardiometabolic disease spectrum
  8. Functional and evolutionary significance of unknown genes from uncultivated taxa
  9. Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism
  10. Towards the biogeography of prokaryotic genes
  11. Combinatorial, additive and dose-dependent drug–microbiome associations
  12. An open code pledge for the neuroscience community
  13. GUNC: detection of chimerism and contamination in prokaryotic genomes
  14. Metagenomic assessment of the global diversity and distribution of bacteria and fungi
  15. Macrel: antimicrobial peptide screening in genomes and metagenomes
  16. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
  17. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
  18. Microbial abundance, activity and population genomic profiling with mOTUs2
  19. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
  20. Global Trends in Marine Plankton Diversity across Kingdoms of Life
  21. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
  22. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
  23. Extensive transmission of microbes along the gastrointestinal tract
  24. Similarity of the dog and human gut microbiomes in gene content and response to diet
  25. Structure and function of the global topsoil microbiome

Full list of publications on Google Scholar...

Copyright (c) 2018-2022. Luis Pedro Coelho and other group members. All rights reserved.