Luis Pedro Coelho

BDB-Lab Publications

  1. Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
  2. SemiBin: Incorporating information from reference genomes with semi-supervised deep learning leads to better metagenomic assembled genomes (MAGs)
  3. metaMIC: reference-free Misassembly Identification and Correction of de novo metagenomic assemblies
  4. GUNC: detection of chimerism and contamination in prokaryotic genomes
  5. Metagenomic assessment of the global diversity and distribution of bacteria and fungi
  6. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
  7. Macrel: antimicrobial peptide screening in genomes and metagenomes
  8. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
  9. Extensive transmission of microbes along the gastrointestinal tract
  10. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
  11. Microbial abundance, activity and population genomic profiling with mOTUs2
  12. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
  13. Global Trends in Marine Plankton Diversity across Kingdoms of Life
  14. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
  15. Structure and function of the global topsoil microbiome
  16. Similarity of the dog and human gut microbiomes in gene content and response to diet

Full list of publications on Google Scholar...


Copyright (c) 2018-2021. Luis Pedro Coelho and other group members. All rights reserved.