Luis Pedro Coelho

BDB-Lab Publications

  1. Towards the biogeography of prokaryotic genes
  2. Combinatorial, additive and dose-dependent drug–microbiome associations
  3. An open code pledge for the neuroscience community
  4. GUNC: detection of chimerism and contamination in prokaryotic genomes
  5. Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
  6. SemiBin: Incorporating information from reference genomes with semi-supervised deep learning leads to better metagenomic assembled genomes (MAGs)
  7. metaMIC: reference-free Misassembly Identification and Correction of de novo metagenomic assemblies
  8. EXPERT: Transfer Learning-enabled context-aware microbial source tracking
  9. Metagenomic assessment of the global diversity and distribution of bacteria and fungi
  10. Macrel: antimicrobial peptide screening in genomes and metagenomes
  11. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
  12. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
  13. Microbial abundance, activity and population genomic profiling with mOTUs2
  14. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
  15. Global Trends in Marine Plankton Diversity across Kingdoms of Life
  16. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
  17. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
  18. Extensive transmission of microbes along the gastrointestinal tract
  19. Similarity of the dog and human gut microbiomes in gene content and response to diet
  20. Structure and function of the global topsoil microbiome

Full list of publications on Google Scholar...

Copyright (c) 2018-2021. Luis Pedro Coelho and other group members. All rights reserved.