SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

by Thomas S B Schmidt, Anthony Fullam, Pamela Ferretti, Askarbek Orakov, Oleksandr M Maistrenko, Hans-Joachim Ruscheweyh, Ivica Letunic, Yiqian Duan, Thea Van Rossum, Shinichi Sunagawa, Daniel R Mende, Robert D Finn, Michael Kuhn, Luis Pedro Coelho, Peer Bork

Abstract

SPIRE provides the largest sets of consistently processed metagenomes, newly generated MAGs and profilable microbial species clusters to date. Combined with a high degree of curation and integration of various data modalities (MAGs, contigs, genes, profiles, etc.), SPIRE is the most comprehensive resource available to study microbial diversity and function. Covering a broad range of habitats and geography, SPIRE enables true 'planetary-scale' analyses of microbiomes across various environments, including so far understudied ones. At the same time, SPIRE encompasses large amounts of ‘novel’, previously undescribed microbial diversity both at the gene and genome level.

Full text: https://doi.org/10.1093/nar/gkad943


Copyright (c) 2018–2026. Luis Pedro Coelho and other group members. All rights reserved.

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